To me it sounds like you want to be using a tool like Matlab or matplotlib in python to automatically generate various types of plots from your data. There are a wide variety of books about Matlab, and I don't really know one better than the rest. For python, there's "Beginning Python Visualization" by Vaingast. It's pretty introductory, but provides good starting points. The matplotlib web site also provides a gallery of example plots with code.
Beginning Python Visualization
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